Publications

X-ray microtomography–based atlas of mouse cranial development

Published in GigaScience, 2021

We present a comprehensive dataset of X-ray 3D computed tomography images of the developing mouse head with high-quality manual segmentation masks of cartilaginous nasal capsules.

Recommended citation: Jan Matula, Marketa Tesarova, Tomas Zikmund, Marketa Kaucka, Igor Adameyko, Jozef Kaiser, X-ray microtomography–based atlas of mouse cranial development, GigaScience, Volume 10, Issue 3, March 2021, giab012, https://doi.org/10.1093/gigascience/giab012 https://academic.oup.com/gigascience/article/10/3/giab012/6156288?login=true

Segmentation of cartilage tissue in micro CT images of mouse embryos with modified U-net convolutional neural network

Published in Proceedings of the 25th Conference STUDENT EEICT 2019, 2019

This paper deals with the use of artificial intelligence for segmentation of biological structures in micro computed tomography images.

Recommended citation: MATULA, J. SEGMENTATION OF CARTILAGE TISSUE IN MICRO CT IMAGES OF MOUSE EMBRYOS WITH MODIFIED U-NET CONVOLUTIONAL NEURAL NETWORK. In Proceedings of the 25th Conference STUDENT EEICT 2019. Brno: Brno University of Technology, 2019. p. 191-194. ISBN: 978-80-214-5735-5. https://conf.feec.vutbr.cz/eeict/